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Chapter 11.1 · Section 11: Gastrointestinal & Surgical

Spontaneous Intestinal Perforation (SIP) and Necrotizing Enterocolitis (NEC)

Recognition and differentiation of SIP vs NEC, immediate bedside algorithm, Bell staging, diagnostic workup, management bundle, antibiotic/bowel-rest duration, surgical triggers, refeeding and intestinal rehabilitation
Abdominal Emergency Preterm / VLBW / ELBW Pneumatosis / Free Air Drain vs Laparotomy Human Milk Prevention Baylor Ed. 33 cross-checked Sept 2026
Sources: Baylor 2025–2026 (Section 6.1) · West Midlands 2025–2028 · Belize 2018–2021 · AAP Probiotics 2021 · current systematic-review evidence. Original Neonatology Academy synthesis. Not a substitute for local NICU policy, surgical protocol, or bedside clinician judgment. Doses, thresholds, and durations must be verified locally.

Bedside Message

Treat suspected disease early — these are abdominal emergencies

SIP and NEC are abdominal emergencies in premature and critically ill neonates. For suspected disease: stop feeds, decompress the stomach, obtain urgent imaging and labs, start broad-spectrum antibiotics when NEC is suspected beyond mild observation-only disease, involve pediatric surgery early, and stabilize perfusion, ventilation, glucose, electrolytes, coagulation, platelets, pain, and temperature.

1. Immediate Bedside Algorithm

StepActionWhy It Matters
1. Recognize Any preterm infant with acute abdominal distension, discoloration, bloody stool, bilious emesis/residuals, apnea/bradycardia, metabolic acidosis, thrombocytopenia, hypotension, or sudden deterioration should be evaluated for NEC or SIP. NEC and SIP can progress rapidly; early symptoms overlap with sepsis, ileus, obstruction, volvulus, milk-protein enterocolitis, and candidiasis.
2. Stop enteral intake Hold feeds and oral medications. Place an orogastric or Replogle tube to low intermittent suction or gravity according to severity and local practice. Reduces bowel distension, aspiration risk, and ongoing enteral stress during intestinal inflammation/perforation.
3. Stabilize ABCs Assess airway, breathing, circulation, perfusion, blood pressure, temperature, glucose, urine output, lactate, and acid-base status. Escalate respiratory support if worsening acidosis, apnea, shock, or abdominal distension compromises ventilation. Systemic illness and bowel ischemia worsen each other; shock and hypoxia accelerate intestinal injury.
4. Image urgently Obtain abdominal radiographs: supine AP plus left lateral decubitus or cross-table lateral if perforation is suspected. Repeat serial films based on severity, often every 6–12 hours early. Radiographs identify pneumatosis, portal venous gas, fixed loops, gasless abdomen, and pneumoperitoneum.
5. Start evaluation CBC/differential, platelets, CRP if used locally, blood culture, electrolytes, glucose, BUN/creatinine, blood gas, lactate, coagulation profile if severe, type/screen if unstable or surgical. Guides severity, transfusion, renal dosing, electrolyte correction, and operative readiness.
6. Treat Start broad-spectrum antibiotics for definite or strongly suspected NEC. Support with fluids, blood products, inotropes, analgesia, PN, and surgical consultation. NEC is inflammatory, infectious, ischemic, and systemic; treatment must be multidisciplinary.

2. Definitions and High-Risk Infants

ConditionPractical DefinitionTypical Population
NEC Acute inflammatory intestinal disease with mucosal injury, bacterial invasion/dysbiosis, hemorrhagic necrosis, and possible perforation. Radiographic pneumatosis intestinalis and/or portal venous gas supports definite NEC. Most cases occur in premature infants. Risk increases as gestational age and birth weight decrease; term NEC is more often associated with congenital heart disease, hypoperfusion, polycythemia, intestinal anomaly, or severe illness.
SIP Usually focal, isolated intestinal perforation, often terminal ileum, without diffuse bowel necrosis or classic pneumatosis. Presentation may be sudden abdominal distension, bluish abdominal discoloration, pneumoperitoneum, or gasless abdomen. Very preterm/VLBW or ELBW infants, often during the first 1–2 weeks. Associated factors include extreme prematurity, chorioamnionitis, early postnatal steroids, and exposure to indomethacin, especially with hydrocortisone.
Medical NEC NEC managed without surgery: bowel rest, decompression, antibiotics, hemodynamic and respiratory support, serial exams, and serial imaging. Bell stage II or selected stage III without perforation and with clinical improvement.
Surgical NEC / SIP Disease requiring drain or laparotomy because of perforation, clinical deterioration despite medical care, obstruction/mass/stricture, or severe non-resolving abdominal disease. ELBW infants may be candidates for bedside primary peritoneal drainage; stable/larger infants may proceed to laparotomy based on surgical assessment.
The epidemiology, in numbers (Baylor Ed. 33)
  • SIP: median age at onset 7 days (range 0–15), affecting 2% of VLBW and 3% of ELBW infants, median gestational age 26 weeks, with a male predominance. Mortality remains 10–30% despite optimal care — but 50–60% of infants managed with a peritoneal drain never need a laparotomy.
  • NEC: occurs in 3–10% of VLBW infants, with mortality as high as 30%. It also appears in late preterm and term infants with predisposing conditions — congenital heart disease, gastroschisis, severe growth restriction.
  • What prevention achieves: in VLBW infants, an exclusive human milk diet plus adherence to a feeding protocol can bring overall NEC incidence below 5%, and NEC requiring surgery within two weeks of onset to about 1%. Whether this transfers to infants with congenital heart disease or abdominal wall defects is unknown.
  • Surgical approach: the NEST trial — the largest study of surgical options for NEC and SIP at or below 1000 g — found no significant difference in death or neurodevelopmental outcome between initial laparotomy and peritoneal drainage.
  • Compared with surgical NEC, infants with SIP have a similar risk of combined death or neurodevelopmental impairment, but greater risks of ROP, IVH and white matter injury.
  • Stool occult blood testing is not effective for identifying developing NEC — do not rely on it.
  • Urine culture in suspected NEC: take a catheterized specimen in infants above 1500 g. No bladder taps.
Risk recognition

Prematurity is the strongest risk factor for NEC. Additional risks include IUGR, abnormal antenatal Doppler flow, perinatal hypoxia/asphyxia, low systemic blood flow, ductal-dependent or low-output CHD, significant PDA, prolonged empiric antibiotics, prolonged NPO, lack of antenatal steroids, infection, formula exposure, exchange transfusion, and intestinal anomalies.

3. Distinguishing SIP from NEC

FeatureSuggests SIPSuggests NEC
Timing Often earlier in ELBW infants, commonly first week but may occur up to 2 weeks. Often later in the most immature infants; age of onset is inversely related to gestational age.
Pathology pattern Focal isolated perforation, usually terminal ileum, with relatively normal surrounding bowel. Segmental or multifocal inflammation/necrosis; may progress to perforation, strictures, short bowel, and systemic shock.
Radiology Pneumoperitoneum or gasless abdomen; classically no pneumatosis intestinalis or portal venous gas. Pneumatosis intestinalis, portal venous gas, fixed dilated loop, bowel wall thickening, paucity of gas, or pneumoperitoneum if perforated.
Systemic signs May have sudden distension and instability; systemic inflammatory signs may be less prominent early. Frequently systemic: apnea/bradycardia, temperature instability, acidosis, thrombocytopenia, hypotension, poor perfusion, DIC, oliguria.
Management overlap NPO, decompression, antibiotics, stabilization, urgent surgery consult. Drain may be used in unstable ELBW infants. NPO, decompression, antibiotics, stabilization, urgent surgery consult; surgery for perforation or failure of medical therapy.

4. Prevention Framework

Probiotics: strong trial data, and a regulatory position that overrides it (Baylor Ed. 33)
  • What the 2023 Cochrane review found in very preterm or VLBW infants: probiotics reduced NEC by 46% (57 trials, 10,918 infants, number needed to treat 33) — by 30% when only high-quality trials are counted (low certainty) — reduced mortality by 33% (54 trials, 10,484 infants, NNT 50) and late-onset sepsis by 11% (49 trials, 9,876 infants, moderate certainty).
  • The AGA and ESPGHAN both issued conditional GRADE recommendations supporting specific strains or combinations for preterm infants.
  • The AAP's May 2021 clinical report cautioned against routine use, partly because no pharmaceutical-grade probiotic product exists in the United States. In September 2023 the FDA warned of invasive disease from probiotic strains in preterm patients, stressed that no probiotic product is FDA-approved to prevent or treat disease in infants, and stated that giving live microbes to treat or prevent disease requires an Investigational New Drug application.
  • Baylor's position: probiotics are not used in their NICUs. The reason is product quality and regulatory status, not an argument that the trial data are wrong — which matters if you practise where a pharmaceutical-grade product is available.
DomainRecommended PracticeAvoid / Caution
Human milk Prioritize mother’s own milk. Use donor human milk when mother’s milk is unavailable and local policy supports it. Support mothers to continue pumping during NEC recovery. Avoid unnecessary interruption of milk expression support. Formula decisions should be individualized when human milk is unavailable.
Feeding practice Use standardized feeding protocols, cautious advancement in high-risk infants, careful assessment of feeding cues and intolerance, and early trophic feeds when clinically appropriate. Avoid prolonged unnecessary NPO because intestinal disuse may impair mucosal adaptation and motility.
Perfusion & oxygenation Maintain normoxia, normothermia, adequate systemic blood flow, blood pressure, hemoglobin, and acid-base status. Avoid hypoxia, shock, excessive vasoconstriction, and unrecognized low-output states.
Antibiotic stewardship Use empiric antibiotics appropriately and stop when cultures and clinical course do not support infection. Avoid prolonged empiric antibiotic exposure without indication.
Medication safety Review exposure to NSAIDs, steroids, acid blockade, and other medications that may affect intestinal risk in ELBW infants. Use concurrent indomethacin and early hydrocortisone only when benefits clearly outweigh intestinal risk.
Probiotics Follow institutional policy, product quality controls, and national guidance. Do not use as treatment for active NEC. Routine universal probiotic use is not supported by AAP guidance in settings lacking pharmaceutical-grade regulated products, especially in infants <1000 g.

4+. When to Call a Surgical Centre About NEC (Baylor Ed. 33)

Pneumoperitoneum is the only absolute operative indication
  • Surgical options are laparotomy or a peritoneal drain. Pneumoperitoneum remains the only absolute indication; clinical deterioration is a relative one, weighing benefit against operative risk. Most infants improve with bowel rest, decompression and antibiotics, so the task is to spot those likely to progress early enough to avoid transport delays.
  • Call the surgical centre to discuss if any of: a fixed dilated loop or pneumatosis on serial films; portal venous gas; a fixed abdominal mass or abdominal wall discoloration; a focal fluid collection on ultrasound; hypotension with or without pressors; a blood culture growing a gut organism; falling or persistent platelets <100 × 10³/µL or ANC <2000/µL; pH <7.25 or lactate persistently >1.5; a persistently high or rising CRP.

5. Clinical Recognition and Staging

CategoryFindings That Increase ConcernImmediate Implication
Systemic signs Apnea, bradycardia, respiratory distress, temperature instability, lethargy, irritability, poor perfusion, hypotension, oliguria, metabolic acidosis, elevated lactate, bleeding tendency. Assess for sepsis and shock; obtain cultures/labs; escalate monitoring and cardiorespiratory support.
Abdominal signs Distension, tenderness, discoloration, shiny/erythematous abdominal wall, ileus, absent bowel sounds, bilious emesis, bloody stool, abdominal mass, increased gastric output. Stop feeds, decompress, urgent imaging, surgery notification if severe or progressive.
Bell stage I — suspected Mild systemic or GI signs with non-diagnostic radiographs. Observation, labs, imaging trend, NPO/antibiotics based on clinical risk and local pathway.
Bell stage II — definite Clinical illness plus pneumatosis intestinalis and/or portal venous gas, with or without systemic toxicity. Medical NEC bundle: NPO, decompression, antibiotics, serial imaging/exam/labs, PN, surgery awareness.
Bell stage III — advanced Shock, DIC, severe acidosis, worsening ventilation, fixed loop, abdominal wall inflammation, pneumoperitoneum, or impending perforation. Full resuscitation, urgent surgery, blood products, broad antibiotics, consider antifungal coverage in selected high-risk nonresponders.
Important limitation

Occult blood or guaiac-positive stool alone is not a reliable NEC screen in tube-fed premature infants, and feeding residuals alone do not reliably predict intestinal injury. Interpret all findings in the full clinical context.

6. Diagnostic Workup

AreaRecommended EvaluationClinical Notes
Laboratory CBC with differential and platelets; blood gas; lactate; electrolytes; glucose; BUN/creatinine; CRP trend if used; blood culture; coagulation profile and type/screen if severe or surgical. Thrombocytopenia, neutropenia, hyponatremia, hyperkalemia, acidosis, high lactate, and coagulopathy suggest severe disease or shock.
Radiography Supine AP abdomen; add left lateral decubitus/cross-table lateral if perforation is suspected. Repeat every 6–12 hours early if evolving disease. Diagnostic signs include pneumatosis, portal venous gas, persistent/fixed loop, and pneumoperitoneum.
Ultrasound Use when radiographs are equivocal but concern remains high, or to evaluate perfusion, bowel wall thickness, pneumatosis, portal venous gas, complex ascites, or free air. Portable ultrasound can help when bowel gas is sparse or when transport is unsafe; it should not delay surgery for obvious perforation.
Differential diagnosis Sepsis with ileus, spontaneous intestinal perforation, volvulus/malrotation, obstruction, milk-protein enterocolitis, infectious enterocolitis, systemic candidiasis, metabolic disease. Volvulus is a surgical emergency; persistent bilious vomiting or sudden shock with abdominal signs requires urgent surgical/radiology discussion.

7. Initial Management Bundle

ComponentBedside ActionEscalation Trigger
Bowel rest & decompression NPO. Stop oral medications. Place OG/Replogle to low intermittent suction; monitor color and volume of output. Persistent bilious/bloody output, distension, or poor decompression.
Antibiotics For definite NEC or strong suspicion: ampicillin + aminoglycoside + anaerobic coverage is common; piperacillin-tazobactam may be an alternate depending on local antibiogram/formulary. Septic shock, positive cultures, renal dysfunction, fungal risk, or failure to improve warrants consultant/pharmacy/ID input.
Respiratory Support oxygenation and ventilation. Consider intubation if severe distension, acidosis, apnea, shock, or CPAP worsens bowel distension. Rising lactate, worsening acidosis, apnea/bradycardia, increasing oxygen/pressure needs.
Circulation Restore perfusion with careful isotonic fluid boluses for shock, vasoactive support as needed, and close urine-output/lactate monitoring. Hypotension, poor pulses, oliguria, base deficit, lactate rise, persistent metabolic acidosis.
Blood products Correct anemia, thrombocytopenia, and coagulopathy according to severity and local transfusion thresholds. Bleeding, DIC, platelets falling rapidly, impending surgery, or shock.
Nutrition Start PN early if prolonged bowel rest is expected. Provide adequate amino acids/energy and monitor glucose, electrolytes, triglycerides, and cholestasis markers. Anticipated NPO >3–5 days, Bell II/III, surgery, ostomy, or intestinal failure risk.
Pain & comfort Provide analgesia, minimal handling, thermoregulation, family updates, and developmentally supportive care. Severe abdominal tenderness, ventilated infant, drain/laparotomy, or escalating instability.

8. Antibiotic and Bowel-Rest Duration Framework

DiagnosisSuggested regimen (Baylor Ed. 33, Table 6-1)AlternativeMaximum duration
Medical NEC without pneumatosisAmpicillin + amikacinPiperacillin–tazobactam — only in selected cases where routine cover is judged inadequate on local susceptibility patterns, or the infant fails to improve on the standard regimen7 days
Medical NEC with pneumatosisAmpicillin + amikacin + metronidazole7 days
Surgical NEC, spontaneous intestinal perforation, post-drain or post-laparotomyAmpicillin + amikacin + metronidazole10 days
ScenarioTypical ApproachNotes
Suspected NEC, rapid improvement, non-diagnostic imaging Short course or discontinuation after reassessment may be appropriate if cultures negative and clinical/radiographic concern resolves. Avoid overtreatment, but do not under-treat evolving disease.
Medical NEC with pneumatosis, no perforation Commonly 7 days in some pathways, or 7–10 days depending on severity and clinical response. Baylor pathway supports shorter maximum durations for selected medical NEC; Belize/older pathways often use 7–10 days.
Surgical NEC, SIP, drain, or laparotomy Often approximately 10 days, individualized by operative findings, source control, cultures, and clinical course. Longer therapy may be needed for persistent sepsis, abscess, bacteremia, fungal infection, or incomplete source control.
Antifungal coverage Not routine for all NEC. Consider in high-risk infants with central line/TPN, thrombocytopenia, Candida colonization, poor response, or unit epidemiology. Discuss with ID/pharmacy and follow local fungal-risk policy.

9. Surgical Consultation and Operative Triggers

Pneumoperitoneum = perforated bowel until proven otherwise

Free air on abdominal imaging requires immediate pediatric surgery notification and preparation for drain or laparotomy. Do not wait for further deterioration.

TriggerInterpretationAction
Pneumoperitoneum Perforated bowel until proven otherwise. Immediate pediatric surgery notification. Prepare for drain or laparotomy.
Clinical deterioration despite medical care Progressive bowel necrosis, perforation, uncontrolled sepsis, or worsening shock. Escalate support; repeat imaging; urgent surgical decision.
Fixed dilated loop, abdominal mass, worsening distension Possible necrotic segment, obstruction, evolving perforation, or stricture. Serial imaging and early surgery involvement.
Rapid platelet fall, DIC, rising lactate/acidosis Severe systemic disease or worsening ischemia. Treat shock/coagulopathy; consider operative source control if abdomen worsening.
ELBW unstable infant May not tolerate laparotomy/anesthesia initially. Primary peritoneal drainage can temporize and sometimes definitively manage selected SIP/NEC.
Larger/stable infant with surgical abdomen May tolerate definitive exploration. Laparotomy aims to control sepsis, remove nonviable bowel, preserve bowel length, and manage stoma/anastomosis decisions.

10. Recovery, Refeeding, and Intestinal Rehabilitation

PhasePractical CareMonitoring
Readiness to refeed Consider when abdominal exam normalizes, gastric output decreases and becomes non-bilious, stool/ostomy output returns, inflammatory/sepsis markers improve, and imaging stabilizes. Do not refeed solely by day number; integrate surgical and dietitian input.
Initial feeds Use mother’s own milk when available. Donor human milk is preferred for preterm infants when mother’s milk is unavailable. Elemental or semi-elemental formula may be considered when human milk is unavailable or malabsorption/allergy is a concern. Start trophic feeds; monitor emesis, distension, output, acidosis, stool, weight, and cardiorespiratory tolerance.
Advancement Advance slowly based on disease severity, residual bowel length, ostomy output, and prior intolerance. High-risk intestinal failure may need 5–10 mL/kg/day increments 1–2 times weekly; moderate-risk patients may tolerate faster advancement. Track growth, urine sodium if poor growth/intestinal losses, electrolytes, conjugated bilirubin, liver enzymes, triglycerides, and micronutrients if prolonged PN.
Central line & PN Keep central access while PN is needed and until adequate enteral intake/growth are demonstrated. Remove when risk of line infection exceeds benefit and enteral regimen is stable. Consider intestinal rehabilitation consult for surgical NEC, SIP with prolonged PN, short bowel, ostomy, cholestasis, multiple failed feeding attempts, or poor growth.
Complications Watch for stricture, recurrent NEC, fistula, short bowel, high-output ostomy, PN-associated cholestasis, metabolic bone disease, micronutrient deficiency, oral aversion, and neurodevelopmental impairment. Arrange surgical/GI/nutrition/neurodevelopmental follow-up and clear family discharge teaching.

11. Monitoring Checklist

Time WindowMinimum MonitoringDocumentation
First 0–6 hours after suspicion Continuous cardiorespiratory and SpO₂ monitoring; frequent BP; strict intake/output; serial abdominal exams; initial labs/culture/gas/lactate; imaging; surgery notification if Bell II/III or SIP/perforation concern. Time of symptom onset, NPO time, decompression tube, antibiotic start time, imaging interpretation, surgery discussion, parent update.
First 24–48 hours Serial abdominal exams, girth only if unit uses it consistently, repeat gases/lactate/electrolytes/CBC/platelets/coags as severe disease requires, repeat radiographs 6–12 hourly if evolving. Trend table: abdomen, ventilation, perfusion, urine output, platelets, lactate, radiology, antibiotic plan.
Days 3–10 Daily reassessment of antibiotic need, PN adequacy, cholestasis risk, central-line necessity, pain, sedation, renal function, and feeding-readiness signs. Daily multidisciplinary plan with neonatology, surgery, nursing, pharmacy, nutrition, and family.
Post-recovery / discharge Growth, stool/ostomy output, electrolytes, micronutrients if prolonged PN, oral feeding skills, neurodevelopment, surgical complications, stoma care if applicable. Written feeding plan, red flags, follow-up appointments, line/stoma teaching, emergency return instructions.

12. Source-Integration Notes

TopicHow the Sources DifferGuideline Position
Antibiotic duration Baylor gives shorter consensus-based maximum durations for selected medical NEC; Belize uses older 7–10 or 10–14 day language. Use shorter effective courses when clinically improving and source control is adequate; individualize for culture results, operative findings, and local antimicrobial stewardship.
Ultrasound Baylor highlights bedside ultrasound when radiographs are equivocal; Belize also notes ultrasound can identify small free gas/fluid/ascites. Use ultrasound as an adjunct, especially with gasless abdomen or equivocal radiographs, but do not let it delay surgical intervention for obvious perforation.
Surgery choice Sources agree that drain and laparotomy both have roles; patient size, stability, anatomy, and surgeon judgment determine approach. In unstable ELBW infants, primary peritoneal drainage may be a bridge or definitive therapy; stable/larger infants with necrotic bowel often need laparotomy.
Prevention All sources support human milk and standardized feeding; probiotic guidance varies internationally. Prioritize human milk, feeding protocols, perfusion, antibiotic stewardship, and local probiotic policy with attention to product quality and AAP cautions.

13. Parent Communication Script

Suggested language

“Your baby has signs that may mean the intestine is inflamed or, less commonly, has developed a small perforation. We are stopping feeds, decompressing the stomach, checking blood tests and X-rays, starting antibiotics when needed, and involving the surgical team early. Some babies improve with medical treatment, while others need a drain or surgery. We will update you frequently and support milk expression so feeding can restart safely when the bowel recovers.”

Key Takeaways — Chapter 11.1

  • For suspected NEC/SIP: stop feeds, decompress (OG/Replogle), image urgently, send labs/cultures, and notify surgery early.
  • NEC = inflammatory/ischemic bowel disease with pneumatosis and/or portal venous gas; SIP = focal isolated perforation (often terminal ileum) without classic pneumatosis.
  • Pneumoperitoneum means perforation until proven otherwise — immediate surgical notification.
  • Start broad-spectrum antibiotics for definite or strongly suspected NEC; tailor duration to severity, cultures, and source control (shorter when improving).
  • Unstable ELBW infants may be managed with primary peritoneal drainage; stable/larger infants with necrotic bowel often need laparotomy.
  • Occult blood and feeding residuals alone are unreliable — interpret in full clinical context.
  • Prioritize human milk, standardized feeding, perfusion, and antibiotic stewardship for prevention; refeed by clinical recovery, not day number.

Selected References and Source Base

  • Baylor College of Medicine. Guidelines for Acute Care of the Neonate, Edition 33, 2025–2026. Section 6.1: Spontaneous Intestinal Perforation and Necrotizing Enterocolitis.
  • West Midlands Neonatal Operational Delivery Network / Bedside Clinical Guidelines Partnership. Neonatal Guidelines 2025–2028. Gastrointestinal care, environment, temperature, and linked surgical/critical care pathways.
  • Belize Ministry of Health. Neonatal Clinical Practice Guidelines 2018–2021. Necrotising Enterocolitis section.
  • AAP Clinical Report: Use of Probiotics in Preterm Infants. Pediatrics. 2021;147(6):e2021051485. Link
  • Solis-Garcia G, Pierro A, Jasani B. Laparotomy versus peritoneal drainage as primary treatment for surgical NEC or SIP in preterm neonates: systematic review and meta-analysis. Children. 2023. PubMed
  • Ang JL, Rath CP, Tan H, Patole S, Rao SC. Mortality and neurodevelopmental outcomes of infants with spontaneous intestinal perforation: systematic review and meta-analysis. Arch Dis Child Fetal Neonatal Ed. 2023. PubMed
  • Dermyshi E, et al. Age of onset of NEC and focal intestinal perforation in very preterm and low birthweight infants: systematic review. BMJ Open. 2023. PubMed